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SKM 2023 – wissenschaftliches Programm

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BP: Fachverband Biologische Physik

BP 11: Poster Session I

Dienstag, 28. März 2023, 12:30–15:30, P1

12:30 BP 11.1 Reinforcement Learning: Optimizing Target-search in a homogeneous environment — •Harpreet Kaur, Michele Caraglio, and Thomas Franosch
12:30 BP 11.2 A study of bacteria entrapment using multiparticle collision dynamics — •Pierre Martin and Holger Stark
  12:30 BP 11.3 The contribution has been withdrawn.
12:30 BP 11.4 Self-propulsion of Janus particles at small laser powers and the impact of salt — •Franziska Braun and Regine von Klitzing
12:30 BP 11.5 An omnipresent material that still suprises: Anomalous stress relaxation of polydimethylsiloxane (PDMS)Philipp Lach, Erdem Bondan, Pierre-Louis Cramer, Nan Xue, Robert W. Style, Stefanie Heyden, •Charlotta Lorenz, and Eric R. Dufresne
12:30 BP 11.6 Complex formation between Polyethylenimine and mRNA — •Jonas Lehnen, Giovanni Settanni, and Friederike Schmid
12:30 BP 11.7 Long-Term Stability, Biocompatibility and Magnetization of Suspensions of Isolated Bacterial MagnetosomesF. Mickoleit, C. Jörke, •R. Richter, S. Rosenfeldt, S. Markert, I. Rehberg, A. S. Schenk, O. Bäumchen, D. Schüler, and J. H. Clement
12:30 BP 11.8 The change of DNA radiation damage upon hydration: In-situ observations by near-ambient-pressure XPS — •Marc Benjamin Hahn, Paul M. Dietrich, and Jörg Radnik
12:30 BP 11.9 A NAP-XPS-study on X-ray radiation damage: Chemical changes to Gene-V Protein — •Dorothea C Hallier, Jörg Radnik, Paul M Dietrich, Harald Seitz, and Marc Benjamin Hahn
12:30 BP 11.10 FTIR and SRE spectra analysis for supported lipids bilayers (SLB's) with dry incorporation of Gramicidin A — •D. Saavedra, N. Moraga, N. Gomez-Vierling, M. Cisternas, R. Rodriguez, S. Rojas, and U.G. Volkmann
12:30 BP 11.11 Detection of Gramicidin by DPH fluorescence technique in supported phospholipids bilayers (SLB's) on SiO2 substrate — •D. Saavedra, M. Soto-Arriaza, N. Moraga, N. Gomez-Vierling, M. Cisternas, and U.G. Volkmann
12:30 BP 11.12 Homogenization of DPPC films deposited from the gas phase onto silicon substrates — •N. Moraga, D. Saavedra, N. Gomez-Vierling, M. Cisternas, M.J. Retamal, and U.G. Volkmann
12:30 BP 11.13 Foam-like properties of bundled polymer networks — •Lukas Paul Weise, Tobias Alexander Kampmann, and Jan Kierfeld
12:30 BP 11.14 Self-assembled Peptides Structure Mediated by Solid Interfaces. — •Leila Sahebmohammadi, Regine von Klitzing, Markus Mezger, and Pol Besenius
12:30 BP 11.15 Investigations of the Fusion Process of Lipid-Based Nanoparticles with Model Endosomal Membranes Using Coarse-Grained Molecular Dynamics Simulations — •Thomas Kolbe, Friederike Schmid, and Giovanni Settanni
12:30 BP 11.16 Machine Learning Guided RNA Contact Prediction — •Utkarsh Upadhyay, Oskar Taubert, Christian Faber, and Alexander Schug
12:30 BP 11.17 Neighbor list artifacts in molecular dynamics simulations — •Hyuntae Kim
12:30 BP 11.18 Sequential resource-sharing speeds up replication in Plasmodium falciparum — •Patrick Binder, Severina Klaus, Markus Ganter, Ulrich S. Schwarz, Thomas Höfer, and Nils B. Becker
12:30 BP 11.19 Semantic Segmentation for Single Particle Tracking in Noisy Data — •Mattias Luber, Mohammad Amin Eskandari, and Timo Betz
12:30 BP 11.20 Mathematical modelling of Nippostrongylus brasiliensis helminth infection: from single worm motility to tissue load dynamics — •Soham Mukhopadhyay, Jonathan Pollock, David Voehringer, and Vasily Zaburdaev
12:30 BP 11.21 RNA G-quadruplex folding is a multi-pathway process with a variety of short-lived intermediate states — •Marijana Ugrina, Ines Burkhart, Diana Müller, Harald Schwalbe, and Nadine Schwierz
12:30 BP 11.22 OCTOPOS.jl: A user-friendly tool for synonymous genetic code optimization — •Simon Christ, Jan-Hendrik Trösemeier, Christel Kamp, and Sophia Rudorf
12:30 BP 11.23 Self-regulation of mRNA expression via LNP-based incoherent feed-forward loops — •Judith A. Müller and Joachim O. Rädler
12:30 BP 11.24 How not to lose spikes: inference methods for spike-count neurons — •Tobias Kühn and Ulisse Ferrari
12:30 BP 11.25 Parameter Optimization for 1D-0D Coupled Blood Flow Models: Physics-Informed Neural Networks versus Kernel Methods — •Tobias Köppl, Benedikt Hoock, and Gabriele Santin
12:30 BP 11.26 From in vitro to in silico: a pipeline for the generation of 3D-cell culture simulations from real image dataElina Nürnberg, Felix Romer, •Mario Vitacolonna, Rüdiger Rudolf, and Simeon Sauer
12:30 BP 11.27 Determinants of lipid-based nanoparticle structure and stability investigated using molecular dynamics simulations — •Jonas Paulus and Giovanni Settanni
12:30 BP 11.28 On European Robin cryptochrome 4 interaction with membranes — •Maja Hanic, Marta Majewska, Izabella Brand, and Ilia Solov'yov
12:30 BP 11.29 Heat flows through rock cracks purify >50 building blocks of life — •Paula Aikkila, Thomas Matreux, Dieter Braun, and Christof Mast
12:30 BP 11.30 Theory of adaptation to a moving optimum — •Sakshi Pahujani and Joachim Krug
12:30 BP 11.31 (De)hydration can speed up chemical processIvar Haugerud, •Pranay Jaiswal, and Christoph Weber
12:30 BP 11.32 Spontaneous engulfment of microparticles by giant unilamellar vesicles — •Clément Marque and Antonio Stocco
12:30 BP 11.33 Impact of biomolecular condensates on endocytosis — •Tyler Harmon, Max Ferrin, and Frank Jülicher
12:30 BP 11.34 Investigation of thermal fluctuations and elastic properties of lipid bilayers via molecular dynamics simulations — •Clara Rickhoff, Azadeh Alavizargar, and Andreas Heuer
12:30 BP 11.35 phospholipids diffusion on the surface of model lipid droplets — •Shima Asfia, Ralf Seemann, and Jean-Baptiste Fleury
12:30 BP 11.36 SAXS measurements during polychromatic illumination of photoswitching in azobenzene lipid vesicles — •Matthias Lösche, Benedikt Baumgartner, Benjamin Ajanovic, Oliver Thorn-Seshold, and Bert Nickel
12:30 BP 11.37 Two-photon 3D laser printing inside synthetic cells — •Tobias Abele, Tobias Messer, Kevin Jahnke, Marc Hippler, Martin Bastmeyer, Martin Wegener, and Kerstin Göpfrich
12:30 BP 11.38 Self-patterning of polyelectrolyte multilayer films: the roles of PSS molecular weight, the top layer, and post-preparation treatmentAmir Azinfar and •Christiane A. Helm
12:30 BP 11.39 Membranes with large phospholipid asymmetries — •Martin Girard
12:30 BP 11.40 Wetting-effects of liquid-liquid condensates on lipid membranesChae Yeon Kang, Yoohyun Chang, and •Katja Zieske
12:30 BP 11.41 A preparative mass spectrometer to deposit intact large native protein complexes — •Paul Fremdling, Tim K. Esser, Bodhisattwa Saha, Alexander A. Makarov, Kyle L. Fort, Maria Reihnhardt-Szyba, Joseph Gault, and Stephan Rauschenbach
12:30 BP 11.42 Tracking the Electron Transfer Cascade in European Robin Cryptochrome 4 Mutants — •Daniel Timmer, Anders Frederiksen, Daniel C. Lünemann, Anitta R. Thomas, Jingjing Xu, Rabea Bartölke, Jessica Schmidt, Tomas Kubar, Antonietta De Sio, Ilia A. Solov'yov, Henrik Mouritsen, and Christoph Lienau
12:30 BP 11.43 Nonlinear Transmission of FUS Protein Solution at 0.5 THz — •Quang Minh Thai, Igor Ilyakov, Manthan Raj, Daniel Dornbusch, Atiqa Arshad, Thales de Oliveira, Marcus Jahnel, Jan-Christoph Deinert, Alexey Ponomaryov, Sergey Kovalev, and Ellen M. Adams
12:30 BP 11.44 Bio-SAXS of Single-Stranded DNA-Binding Proteins: Radiation Protection by the Compatible Solute Ectoine — •Marc Benjamin Hahn, Dorothea C. Hallier, Glen J. Smales, and Harald Seitz
12:30 BP 11.45 Molecular Dynamics Simulations of Large Proteins in Vaccum and during Surface Adsorbtion — •Alpcan Önür, Tim K. Esser, Christoph Globisch, Christine Peter, and Stephan Rauschenbach
12:30 BP 11.46 Dynamics of Tau protein studied with X-ray photon correlation spectroscopy (XPCS) — •Sebastian Retzbach, Nimmi Das Anthuparambil, Anita Girelli, Kevin Pounot, Sonja Timmermann, Maximilian D. Senft, Marvin Kowalski, Michelle Dargasz, Nafisa Begam, Fabian Westermeier, Anastasia Ragulskaya, Fajun Zhang, Christian Gutt, and Frank Schreiber
12:30 BP 11.47 Upconversion-nanoparticle optical trapping for ultraresolution motor protein measurements — •Aleksandr Kostarev and Erik Schäffer
12:30 BP 11.48 Diffusive anchorage of molecular motors facilitates robust cargo transport — •Rachele Catalano, Gina A. Monzon Monzon, Rahul Grover, Ludger Santen, and Stefan Diez
12:30 BP 11.49 Amplified self-stabilization of cell adhesions under load — •Julia Müllner and Benedikt Sabass
12:30 BP 11.50 Is sensory adaptation generally limited by the energy-speed-accuracy tradeoff? — •Vansh Kharbanda and Benedikt Sabass
12:30 BP 11.51 Three-compartment model describes coarsening of biomolecular condensates in Meiosis — •Marcel Ernst and David Zwicker
12:30 BP 11.52 Investigation on the learning ability of the single-celled slime mould P. polycephalum — •Adrian Büchl, Lisa Schick, and Karen Alim
12:30 BP 11.53 Can iron-phthalocyanines, Fe-Pc, on CrI3 imitate active site of hemoglobin? — •Cihan Bacaksiz and Maria Fyta
12:30 BP 11.54 Band formation of red blood cells by density gradient centrifugation — •Luca David Hastenteufel, Felix Milan Maurer, and Christian Wagner
12:30 BP 11.55 Exploiting Onsager regression in passive measurements to reveal active mechanics of living systemsTill Muenker, Gabriel Knotz, Matthias Krüger, and •Timo Betz
12:30 BP 11.56 Theory of rheology and aging of protein condensates — •Ryota Takaki, Louise Jawerth, Marko Popovic, and Frank Jülicher
12:30 BP 11.57 Mitochondrial dynamics control cellular anti-viral responses in the innate immune system — •Felix J. Meigel and Steffen Rulands
12:30 BP 11.58 Monodominance in tropical forests: modelling the influences of biological mechanisms on cluster formation — •Julia Meyer, Pia Backmann, and Alexander K. Hartmann
12:30 BP 11.59 Phase segregation and microemulsion module of DNA oligo based nano-motifs — •Rakesh Chatterjee, Mai P. Tran, Yannik Dreher, Julius Fichtler, Kevin Jahnke, Xenia Tschurikow, Aaron Gadzekpo, Lennart Hilbert, Kerstin Göpfrich, and Vasily Zaburdaev
12:30 BP 11.60 Delay time of erythrocyte sedimentation rate — •Jan Fischer, Thomas John, Lars Kaestner, Christian Wagner, and Alexis Darras
12:30 BP 11.61 Modeling of protein condensates — •Kathrin Hertäg and Joshua Robinson
12:30 BP 11.62 Cumulative refractoriness in Calcium signaling — •Lukas Ramlow, Martin Falcke, and Benjamin Lindner
12:30 BP 11.63 Protein induced lipid demixing in homogeneous membranes — •Piotr Nowakowski, Bernd Henning Stumpf, Ana-Sunčana Smith, and Anna Maciołek
12:30 BP 11.64 Self-organized criticality in animal collectives — •Yunus Sevinchan, David Bierbach, Luis Gómez-Nava, Jens Krause, and Pawel Romanczuk
12:30 BP 11.65 Electro-thermodynamics of coacervate interfaces — •Arghya Majee, Christoph A. Weber, and Frank Jülicher
  12:30 BP 11.66 The contribution has been withdrawn.
12:30 BP 11.67 Density fluctuation analysis of living matter — •Conrad Möckel, Kyoohyun Kim, Abin Biswas, Simone Reber, Vasily Zaburdaev, and Jochen Guck
12:30 BP 11.68 Optimal navigation of smart active particles in complex landscapes — •Mischa Putzke and Holger Stark
12:30 BP 11.69 Evaluation of nanoparticle resistance development of microorganisms — •Stefanie Schuba, Julian Schütt, Jürgen Fassbender, and Denys Makarov
  12:30 BP 11.70 The contribution has been withdrawn.
12:30 BP 11.71 The Influence of pegRNA Variations on Prime Editing Kinetics — •Nathalie Schäffler, Julian Geilenkeuser, Dong-Jiunn Jeffery Truong, Gil Westmeyer, and Joachim Rädler
12:30 BP 11.72 Steady-state operation of a cell-free genetic band-detection circuit — •Anna C. Jäkel, Lukas Aufinger, and Friedrich C. Simmel
  12:30 BP 11.73 The contribution has been withdrawn (duplicate of BP 11.72).
12:30 BP 11.74 A first approach for mimicking guided axon-growth by electrical circuits — •Bakr Al Beattie, Sebastian Jenderny, Karlheinz Ochs, and Dennis Michaelis
12:30 BP 11.75 Mimicking axon-growth by a bio-inspired memristive circuitSebastian Jenderny, •Bakr Al Beattie, and Karlheinz Ochs
12:30 BP 11.76 RNA Contact Prediction by Data Efficient Deep Learning — •Oskar Taubert, Fabrice Lehr, Alina Bazarova, Christian Faber, Philipp Knechtges, Marie Weiel, Charlotte Debus, Daniel Coquelin, Achim Basermann, Achim Streit, Stefan Kesselheim, Markus Götz, and Alexander Schug
12:30 BP 11.77 Influence of Contact Map Topology on RNA Structure Prediction — •Christian Faber and Alexander Schug
12:30 BP 11.78 Combined cell and nanoparticle models for TOPAS to study radiation dose enhancement by Monte-Carlo based particle scattering Simulations — •Marc Benjamin Hahn and Julian Mateo Zutta Villate
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